Variant report

Variant	rs13385665
Chromosome Location	chr2:171773513-171773514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10193291	1.00[AMR][1000 genomes]
rs10930451	1.00[AMR][1000 genomes]
rs13407016	1.00[AMR][1000 genomes]
rs13423178	1.00[AMR][1000 genomes]
rs13428775	1.00[AMR][1000 genomes]
rs13432752	1.00[AMR][1000 genomes]
rs28402303	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171772400-171773600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:171773400-171773600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr2:171773400-171774200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:171773400-171774800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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