Variant report

Variant	rs13385811
Chromosome Location	chr2:72868280-72868281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10084347	1.00[MEX][hapmap]
rs10179254	0.89[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.88[YRI][hapmap]
rs10197127	1.00[AMR][1000 genomes]
rs10206245	1.00[MEX][hapmap]
rs13391821	1.00[MEX][hapmap]
rs13397743	1.00[MEX][hapmap]
rs13401801	1.00[AMR][1000 genomes]
rs13419598	1.00[MEX][hapmap]
rs13426691	1.00[MEX][hapmap]
rs13431249	1.00[MEX][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72840200-72878600	Weak transcription	Aorta	Aorta
2	chr2:72847400-72869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:72854200-72868400	Weak transcription	Fetal Stomach	stomach
4	chr2:72858400-72904000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:72866200-72877400	Weak transcription	Fetal Heart	heart
6	chr2:72866800-72902600	Weak transcription	Left Ventricle	heart
7	chr2:72868200-72868400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:72868200-72868400	Enhancers	Right Ventricle	heart
9	chr2:72868200-72868600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:72868200-72869000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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