Variant report

Variant	rs13386143
Chromosome Location	chr2:148847581-148847582
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10084286	1.00[AMR][1000 genomes]
rs10168627	1.00[AMR][1000 genomes]
rs10169814	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10172623	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10172638	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10174213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10174231	1.00[AMR][1000 genomes]
rs10176479	1.00[AMR][1000 genomes]
rs10180813	1.00[AMR][1000 genomes]
rs10181040	1.00[AMR][1000 genomes]
rs10183450	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10191867	1.00[AMR][1000 genomes]
rs10195846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10197288	1.00[AMR][1000 genomes]
rs10199661	1.00[AMR][1000 genomes]
rs10205968	0.90[AFR][1000 genomes]
rs10211580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10469571	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13385606	1.00[AMR][1000 genomes]
rs13387197	1.00[AMR][1000 genomes]
rs13388113	1.00[AMR][1000 genomes]
rs13395948	1.00[AMR][1000 genomes]
rs13396012	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13399551	1.00[AMR][1000 genomes]
rs13401666	1.00[AMR][1000 genomes]
rs13403934	1.00[AMR][1000 genomes]
rs13404496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13404809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13417167	1.00[AMR][1000 genomes]
rs13417581	1.00[AMR][1000 genomes]
rs13426527	1.00[AMR][1000 genomes]
rs28647742	1.00[AMR][1000 genomes]
rs28801194	1.00[AMR][1000 genomes]
rs7602886	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916286	chr2:148438001-148977722	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv529388	chr2:148471340-148934846	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1002358	chr2:148703807-148942372	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1007683	chr2:148717347-148942372	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv535971	chr2:148717347-148942372	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv869326	chr2:148727068-148859804	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv817366	chr2:148727068-148879681	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1000852	chr2:148730825-148934986	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv535972	chr2:148730825-148934986	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv916766	chr2:148743880-148955720	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv1001339	chr2:148755022-149020866	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv535977	chr2:148755022-149020866	Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv1014570	chr2:148780080-148869729	Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv535978	chr2:148780080-148869729	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv869146	chr2:148787051-149060763	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv535979	chr2:148822091-148859805	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv875276	chr2:148844369-148996824	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:148821200-148857600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr2:148826000-148861000	Weak transcription	Left Ventricle	heart
3	chr2:148834600-148856400	Weak transcription	HSMMtube	muscle
4	chr2:148836800-148853400	Weak transcription	NHDF-Ad	bronchial
5	chr2:148837000-148849200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:148837400-148853000	Weak transcription	HUVEC	blood vessel
7	chr2:148837600-148866800	Weak transcription	Ovary	ovary
8	chr2:148842200-148851600	Weak transcription	Fetal Heart	heart
9	chr2:148843000-148853200	Weak transcription	Osteobl	bone
10	chr2:148843200-148853200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:148843600-148847800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr2:148843600-148860600	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:148845200-148851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:148845200-148853400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:148845200-148853800	Weak transcription	HSMM	muscle
16	chr2:148845200-148858000	Weak transcription	Aorta	Aorta
17	chr2:148845400-148853200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:148845400-148853400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:148845400-148858000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:148845400-148866000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:148845400-148868000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links