Variant report

Variant	rs13386439
Chromosome Location	chr2:212320111-212320112
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16846200	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16846210	0.91[EUR][1000 genomes]
rs1992028	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2033646	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4525624	0.90[EUR][1000 genomes]
rs6748422	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6748656	0.91[EUR][1000 genomes]
rs7601019	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875778	chr2:212297838-212360994	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460066	chr2:212307077-212329416	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv584316	chr2:212307077-212329416	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv460067	chr2:212313400-212378242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv584317	chr2:212313400-212378242	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212317800-212320400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:212319200-212320400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:212319400-212320200	Enhancers	Brain Germinal Matrix	brain
4	chr2:212319400-212320400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:212319400-212320400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:212319600-212320400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:212319600-212320400	Enhancers	Brain Substantia Nigra	brain
8	chr2:212319800-212320200	Weak transcription	Fetal Lung	lung
9	chr2:212319800-212320400	Active TSS	Fetal Brain Male	brain
10	chr2:212319800-212322200	Weak transcription	Pancreas	Pancrea
11	chr2:212320000-212320200	Active TSS	Brain Anterior Caudate	brain
12	chr2:212320000-212328000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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