Variant report
| Variant | rs13387408 |
|---|---|
| Chromosome Location | chr2:125304251-125304252 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:125303094..125305884-chr2:125306381..125308286,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11123050 | 0.84[ASN][1000 genomes] |
| rs11123051 | 0.87[ASN][1000 genomes] |
| rs11888767 | 0.86[ASN][1000 genomes] |
| rs11888769 | 0.87[ASN][1000 genomes] |
| rs11888843 | 0.87[ASN][1000 genomes] |
| rs11890281 | 0.87[ASN][1000 genomes] |
| rs11890329 | 0.87[ASN][1000 genomes] |
| rs11890408 | 0.87[ASN][1000 genomes] |
| rs11890427 | 0.87[ASN][1000 genomes] |
| rs11896097 | 0.86[ASN][1000 genomes] |
| rs11899392 | 0.87[ASN][1000 genomes] |
| rs12464032 | 0.85[ASN][1000 genomes] |
| rs12464048 | 0.85[ASN][1000 genomes] |
| rs12466201 | 0.87[ASN][1000 genomes] |
| rs12468237 | 0.85[ASN][1000 genomes] |
| rs12470517 | 0.87[ASN][1000 genomes] |
| rs12472000 | 0.84[ASN][1000 genomes] |
| rs12711680 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1504005 | 0.86[ASN][1000 genomes] |
| rs1504006 | 0.85[ASN][1000 genomes] |
| rs1504007 | 0.84[ASN][1000 genomes] |
| rs1504008 | 0.87[ASN][1000 genomes] |
| rs1504009 | 0.87[ASN][1000 genomes] |
| rs1504010 | 0.87[ASN][1000 genomes] |
| rs1857690 | 0.86[ASN][1000 genomes] |
| rs1857691 | 0.86[ASN][1000 genomes] |
| rs1857693 | 0.87[ASN][1000 genomes] |
| rs1857694 | 0.87[ASN][1000 genomes] |
| rs1875784 | 0.87[ASN][1000 genomes] |
| rs3941391 | 0.87[ASN][1000 genomes] |
| rs6734052 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014610 | chr2:125124983-125350342 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv834356 | chr2:125141494-125315418 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv834357 | chr2:125258157-125421507 | Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:125291600-125305800 | Weak transcription | Right Atrium | heart |
| 2 | chr2:125303800-125304600 | Enhancers | Fetal Stomach | stomach |
| 3 | chr2:125304200-125305800 | Enhancers | HUES64 Cell Line | embryonic stem cell |
