Variant report

Variant	rs13388525
Chromosome Location	chr2:180408381-180408382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11889308	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13391592	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13394735	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13408803	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13424600	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55762501	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56285553	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6725869	1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6738933	1.00[CEU][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875470	chr2:180400021-180432529	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv523865	chr2:180403128-180426764	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180403800-180408600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180403800-180408600	Weak transcription	Fetal Kidney	kidney
3	chr2:180403800-180409800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:180404000-180410000	Strong transcription	Liver	Liver
5	chr2:180404200-180409800	Weak transcription	Gastric	stomach
6	chr2:180405400-180410600	Enhancers	HepG2	liver
7	chr2:180407000-180411400	Weak transcription	Right Atrium	heart
8	chr2:180407400-180408800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:180407600-180408400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:180407800-180408400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:180407800-180408400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:180407800-180408800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:180407800-180410000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:180408000-180408400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:180408000-180408600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:180408000-180408600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr2:180408000-180408600	Enhancers	Osteobl	bone
18	chr2:180408000-180408800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr2:180408000-180408800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr2:180408000-180408800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr2:180408000-180408800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:180408200-180408400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr2:180408200-180408600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr2:180408200-180408800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:180408200-180408800	Enhancers	Fetal Brain Female	brain
26	chr2:180408200-180409000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:180408200-180409000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr2:180408200-180409200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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