Variant report

Variant	rs13388685
Chromosome Location	chr2:54632839-54632840
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54630441..54633301-chr2:54634857..54637663,2	MCF-7	breast:
2	chr2:54631365..54634215-chr2:54635530..54638511,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10169013	0.83[EUR][1000 genomes]
rs10171393	0.83[EUR][1000 genomes]
rs10189084	0.83[EUR][1000 genomes]
rs10189455	1.00[EUR][1000 genomes]
rs10206622	0.83[EUR][1000 genomes]
rs13403817	0.83[EUR][1000 genomes]
rs13418525	1.00[EUR][1000 genomes]
rs13423872	0.83[EUR][1000 genomes]
rs13431815	1.00[EUR][1000 genomes]
rs17045949	0.83[EUR][1000 genomes]
rs28496426	0.83[EUR][1000 genomes]
rs28609649	0.83[EUR][1000 genomes]
rs4387841	0.83[EUR][1000 genomes]
rs6545404	1.00[EUR][1000 genomes]
rs6545426	0.83[EUR][1000 genomes]
rs6723740	1.00[EUR][1000 genomes]
rs6743995	1.00[EUR][1000 genomes]
rs6746379	0.83[EUR][1000 genomes]
rs6757240	1.00[EUR][1000 genomes]
rs7355672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7574433	0.83[EUR][1000 genomes]
rs9967676	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003205	chr2:54220049-54700843	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv2762639	chr2:54220049-54700855	Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1011790	chr2:54220049-54714553	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1002891	chr2:54227005-54682169	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv535722	chr2:54227005-54682169	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1011690	chr2:54255361-54700843	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54615400-54643000	Weak transcription	Right Ventricle	heart
2	chr2:54618600-54647200	Weak transcription	Left Ventricle	heart
3	chr2:54623600-54643000	Weak transcription	Lung	lung
4	chr2:54630000-54634200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:54630000-54634800	Weak transcription	HSMMtube	muscle
6	chr2:54630000-54638800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:54630200-54637000	Weak transcription	Fetal Stomach	stomach
8	chr2:54630600-54633200	Weak transcription	Fetal Lung	lung
9	chr2:54630600-54634800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:54630600-54636200	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:54630600-54637000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:54630800-54634200	Weak transcription	Brain Anterior Caudate	brain
13	chr2:54630800-54634200	Weak transcription	Fetal Heart	heart
14	chr2:54630800-54635000	Weak transcription	Brain Angular Gyrus	brain
15	chr2:54631200-54634400	Weak transcription	NHLF	lung
16	chr2:54631200-54635400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr2:54631200-54635600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:54631200-54635600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:54631200-54647000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr2:54631800-54635600	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:54631800-54642600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr2:54632000-54636000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:54632000-54636200	Weak transcription	Brain Substantia Nigra	brain
24	chr2:54632200-54633000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:54632200-54643400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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