Variant report
| Variant | rs13389387 |
|---|---|
| Chromosome Location | chr2:178660862-178660863 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:178658083..178660971-chr2:178664386..178667006,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10178473 | 0.89[ASN][1000 genomes] |
| rs10178858 | 0.89[ASN][1000 genomes] |
| rs10178916 | 0.89[ASN][1000 genomes] |
| rs10179500 | 0.90[ASN][1000 genomes] |
| rs10182017 | 0.85[ASN][1000 genomes] |
| rs10182353 | 0.91[ASN][1000 genomes] |
| rs10185318 | 0.91[ASN][1000 genomes] |
| rs10202536 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13395965 | 0.86[ASN][1000 genomes] |
| rs13396065 | 0.86[ASN][1000 genomes] |
| rs13396537 | 0.86[ASN][1000 genomes] |
| rs13421345 | 0.86[ASN][1000 genomes] |
| rs1438040 | 0.84[ASN][1000 genomes] |
| rs1438042 | 0.86[ASN][1000 genomes] |
| rs1898585 | 0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs28380215 | 0.91[ASN][1000 genomes] |
| rs4297923 | 0.85[ASN][1000 genomes] |
| rs4464321 | 0.84[ASN][1000 genomes] |
| rs56314683 | 0.86[ASN][1000 genomes] |
| rs56690966 | 0.86[ASN][1000 genomes] |
| rs57342997 | 0.86[ASN][1000 genomes] |
| rs6433694 | 0.88[ASN][1000 genomes] |
| rs6708580 | 0.89[ASN][1000 genomes] |
| rs6709966 | 0.86[ASN][1000 genomes] |
| rs6718100 | 0.85[ASN][1000 genomes] |
| rs6718657 | 0.87[ASN][1000 genomes] |
| rs6718860 | 0.85[ASN][1000 genomes] |
| rs6718993 | 0.87[ASN][1000 genomes] |
| rs6726253 | 0.87[ASN][1000 genomes] |
| rs6726502 | 0.86[ASN][1000 genomes] |
| rs6733980 | 0.85[ASN][1000 genomes] |
| rs6737872 | 0.89[ASN][1000 genomes] |
| rs6743821 | 0.86[ASN][1000 genomes] |
| rs6751656 | 0.86[ASN][1000 genomes] |
| rs6752264 | 0.86[ASN][1000 genomes] |
| rs6758508 | 0.87[ASN][1000 genomes] |
| rs7584946 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999086 | chr2:178262348-178773585 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv536055 | chr2:178262348-178773585 | Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv583690 | chr2:178638381-178712283 | Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:178649400-178662000 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 2 | chr2:178657600-178661200 | Weak transcription | Right Atrium | heart |
| 3 | chr2:178660400-178663200 | Enhancers | Fetal Heart | heart |
| 4 | chr2:178660800-178661600 | Enhancers | Left Ventricle | heart |
