Variant report

Variant	rs13389401
Chromosome Location	chr2:49476049-49476050
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10183697	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10189901	1.00[EUR][1000 genomes]
rs11687302	0.85[AFR][1000 genomes]
rs11900692	1.00[EUR][1000 genomes]
rs11903279	1.00[EUR][1000 genomes]
rs13392715	0.82[AFR][1000 genomes]
rs13399592	1.00[EUR][1000 genomes]
rs13403556	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13410429	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13418419	1.00[EUR][1000 genomes]
rs1604825	1.00[EUR][1000 genomes]
rs17038225	1.00[EUR][1000 genomes]
rs17038364	1.00[EUR][1000 genomes]
rs28665702	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55939609	1.00[EUR][1000 genomes]
rs58130184	1.00[EUR][1000 genomes]
rs58773038	1.00[EUR][1000 genomes]
rs58976871	1.00[EUR][1000 genomes]
rs60436928	1.00[EUR][1000 genomes]
rs73928558	1.00[EUR][1000 genomes]
rs7564943	0.83[AFR][1000 genomes]
rs7597101	1.00[EUR][1000 genomes]
rs9677134	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008909	chr2:49281630-49571619	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv993555	chr2:49299168-49781707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869321	chr2:49316909-49587401	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv999413	chr2:49324726-49477527	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv874011	chr2:49358655-49489333	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv874012	chr2:49359676-49489333	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1005336	chr2:49422587-49737964	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv535686	chr2:49422587-49737964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1006675	chr2:49422587-49737965	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv535687	chr2:49422587-49737965	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv998367	chr2:49441886-49795482	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1002948	chr2:49447212-49522898	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:49470600-49488200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:49475200-49479800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:49475400-49476200	Enhancers	HMEC	breast
4	chr2:49475400-49476400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:49475400-49476400	Enhancers	NHLF	lung
6	chr2:49475400-49476600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:49475400-49476600	Enhancers	HSMM	muscle
8	chr2:49475400-49476600	Enhancers	HSMMtube	muscle
9	chr2:49475400-49477000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:49475400-49477000	Enhancers	Osteobl	bone
11	chr2:49475600-49476200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:49475600-49476200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:49475600-49476200	Enhancers	NH-A	brain
14	chr2:49475600-49477000	Enhancers	NHDF-Ad	bronchial
15	chr2:49475800-49478200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr2:49476000-49476200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:49476000-49476200	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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