Variant report

Variant	rs1339012
Chromosome Location	chr6:121196593-121196594
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12203839	0.87[EUR][1000 genomes]
rs12527161	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2357968	0.90[EUR][1000 genomes]
rs2357969	0.87[AMR][1000 genomes]
rs2493345	0.89[EUR][1000 genomes]
rs2817945	0.90[EUR][1000 genomes]
rs2817946	0.90[EUR][1000 genomes]
rs6906580	0.87[EUR][1000 genomes]
rs9401346	0.88[AMR][1000 genomes]
rs9401349	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886590	chr6:121153942-121220971	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3418345	chr6:121176302-121199455	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121195600-121198600	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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