Variant report

Variant	rs13390439
Chromosome Location	chr2:63677893-63677894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10084330	1.00[AFR][1000 genomes]
rs10199770	1.00[AFR][1000 genomes]
rs13382368	1.00[AFR][1000 genomes]
rs13393985	1.00[AFR][1000 genomes]
rs13414491	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv874235	chr2:63622470-63709708	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63631800-63681200	Weak transcription	Aorta	Aorta
2	chr2:63631800-63688000	Weak transcription	Right Ventricle	heart
3	chr2:63654600-63678200	Weak transcription	Psoas Muscle	Psoas
4	chr2:63655000-63679000	Weak transcription	Primary T cells from cord blood	blood
5	chr2:63659200-63679200	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:63659600-63679000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr2:63662000-63698000	Weak transcription	Ovary	ovary
8	chr2:63662200-63681400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:63662800-63688000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:63666400-63688000	Weak transcription	Primary B cells from cord blood	blood
11	chr2:63666600-63726800	Weak transcription	Gastric	stomach
12	chr2:63667000-63680600	Weak transcription	Adipose Nuclei	Adipose
13	chr2:63668200-63684800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:63673600-63697800	Weak transcription	Left Ventricle	heart
15	chr2:63674400-63693200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:63675800-63712000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:63677200-63678000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:63677800-63678800	Weak transcription	Lung	lung
19	chr2:63677800-63680600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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