Variant report

Variant	rs13390863
Chromosome Location	chr2:110441560-110441561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12719069	1.00[AMR][1000 genomes]
rs12719070	1.00[AMR][1000 genomes]
rs13383702	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13393753	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2004112	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2099402	1.00[EUR][1000 genomes]
rs6740643	1.00[AMR][1000 genomes]
rs7606872	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874777	chr2:109825516-110693317	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1011456	chr2:110290958-110980402	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv535861	chr2:110290958-110980402	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv482469	chr2:110302488-110452580	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1009367	chr2:110349178-110863354	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	esv2762780	chr2:110367969-110462496	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv491837	chr2:110381297-110964737	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv999552	chr2:110396395-110978224	Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv428061	chr2:110423940-110714002	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:110434200-110447600	Weak transcription	Small Intestine	intestine
2	chr2:110435400-110443000	Weak transcription	Ovary	ovary
3	chr2:110436200-110443000	Weak transcription	Esophagus	oesophagus
4	chr2:110437200-110447400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:110437400-110442800	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:110438400-110443000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:110438600-110446800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr2:110438800-110443000	Weak transcription	Fetal Intestine Small	intestine
9	chr2:110439000-110447600	Weak transcription	Fetal Kidney	kidney
10	chr2:110439400-110442800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr2:110439400-110443000	Weak transcription	Fetal Intestine Large	intestine
12	chr2:110439400-110446800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr2:110439600-110442800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr2:110439600-110442800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:110439600-110443000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:110439600-110443000	Weak transcription	Left Ventricle	heart
17	chr2:110439600-110443000	Weak transcription	Lung	lung
18	chr2:110439600-110443000	Weak transcription	Pancreas	Pancrea
19	chr2:110439600-110443000	Weak transcription	Right Atrium	heart
20	chr2:110439600-110445800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr2:110439600-110447000	Weak transcription	Right Ventricle	heart
22	chr2:110439600-110456400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:110440000-110443000	Weak transcription	Fetal Lung	lung
24	chr2:110440200-110443000	Weak transcription	Fetal Stomach	stomach
25	chr2:110440800-110441600	Enhancers	HepG2	liver
26	chr2:110441400-110445800	Weak transcription	Spleen	Spleen
27	chr2:110441400-110446800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:110441400-110447000	Weak transcription	Liver	Liver
29	chr2:110441400-110456600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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