Variant report

Variant	rs13392496
Chromosome Location	chr2:32332809-32332810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56156729	1.00[AFR][1000 genomes]
rs62142082	1.00[AFR][1000 genomes]
rs62142085	1.00[AFR][1000 genomes]
rs72796828	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv833670	chr2:32295778-32481857	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv873778	chr2:32297984-32409007	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv873779	chr2:32330885-32372245	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32290400-32353400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:32292000-32343200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:32292600-32353800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:32295800-32353800	Weak transcription	Fetal Brain Male	brain
5	chr2:32296400-32362600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:32297600-32360600	Weak transcription	Osteobl	bone
7	chr2:32298800-32341400	Weak transcription	Small Intestine	intestine
8	chr2:32300000-32339600	Weak transcription	HepG2	liver
9	chr2:32309800-32381200	Weak transcription	NHDF-Ad	bronchial
10	chr2:32313200-32360600	Weak transcription	NH-A	brain
11	chr2:32316000-32353600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr2:32316200-32343200	Weak transcription	HSMM	muscle
13	chr2:32322200-32353400	Weak transcription	K562	blood
14	chr2:32325400-32353800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr2:32326000-32352200	Weak transcription	HSMMtube	muscle
16	chr2:32329600-32333000	Strong transcription	Primary T cells from cord blood	blood
17	chr2:32330200-32333000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:32330200-32333000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:32330200-32333000	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr2:32330200-32333200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr2:32330200-32333200	Strong transcription	Liver	Liver
22	chr2:32330200-32333400	Strong transcription	Stomach Smooth Muscle	stomach
23	chr2:32330200-32333600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:32330200-32333600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr2:32330200-32334000	Strong transcription	Fetal Thymus	thymus
26	chr2:32330400-32333000	Strong transcription	Adipose Nuclei	Adipose
27	chr2:32330400-32333200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr2:32330400-32333400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
29	chr2:32330400-32333600	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr2:32330400-32333600	Strong transcription	Primary B cells from cord blood	blood
31	chr2:32330400-32333800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr2:32330400-32334000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:32330600-32333000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr2:32330800-32333000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
35	chr2:32330800-32333000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
36	chr2:32330800-32333000	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr2:32330800-32333000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr2:32330800-32333000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:32330800-32333000	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr2:32330800-32334400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
41	chr2:32330800-32334400	Strong transcription	Primary B cells from peripheral blood	blood
42	chr2:32331200-32333000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr2:32331200-32341000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr2:32331200-32370000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:32331400-32333000	Strong transcription	GM12878-XiMat	blood
46	chr2:32331400-32333200	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr2:32331400-32341200	Weak transcription	Stomach Mucosa	stomach
48	chr2:32331400-32368600	Weak transcription	Psoas Muscle	Psoas
49	chr2:32331400-32370000	Weak transcription	Right Ventricle	heart
50	chr2:32331600-32334000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links