Variant report

Variant	rs13392968
Chromosome Location	chr2:191371041-191371042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191362838..191365518-chr2:191369727..191371363,2	K562	blood:
2	chr2:191271786..191273556-chr2:191370998..191372712,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151690	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10165897	0.97[ASN][1000 genomes]
rs10209172	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478437	0.94[ASN][1000 genomes]
rs12693578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4129697	0.81[ASN][1000 genomes]
rs4146923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4438514	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4500977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4586658	1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.98[ASN][1000 genomes]
rs4853509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4853708	0.87[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7584794	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7585173	0.98[ASN][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs13392968	INPP1	cis	cerebellum	SCAN
rs13392968	MFSD6	cis	lymphoblastoid	seeQTL
rs13392968	INPP1	cis	parietal	SCAN
rs13392968	HIBCH	cis	parietal	SCAN
rs13392968	INPP1	Cis_1M	lymphoblastoid	RTeQTL
rs13392968	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL
rs13392968	HIBCH	cis	cerebellum	SCAN
rs13392968	MFSD6	cis	cerebellum	SCAN

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191334800-191394800	Weak transcription	HSMMtube	muscle
2	chr2:191343000-191372000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:191343400-191373800	Weak transcription	Colonic Mucosa	Colon
4	chr2:191349600-191394600	Weak transcription	NHLF	lung
5	chr2:191351200-191373400	Weak transcription	Small Intestine	intestine
6	chr2:191351400-191385400	Weak transcription	NHEK	skin
7	chr2:191352200-191380600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:191352400-191381600	Weak transcription	Osteobl	bone
9	chr2:191354600-191394600	Weak transcription	HSMM	muscle
10	chr2:191357200-191398200	Weak transcription	Fetal Kidney	kidney
11	chr2:191358400-191379200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:191359600-191374800	Weak transcription	Fetal Heart	heart
13	chr2:191361000-191376000	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr2:191361600-191379800	Strong transcription	Fetal Thymus	thymus
15	chr2:191361800-191375800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr2:191361800-191376000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr2:191362000-191371200	Strong transcription	Primary B cells from cord blood	blood
18	chr2:191362000-191371600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:191362000-191374000	Strong transcription	Primary hematopoietic stem cells	blood
20	chr2:191362000-191375200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr2:191362000-191375400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr2:191362000-191375400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:191362000-191375400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr2:191362200-191371200	Strong transcription	Duodenum Mucosa	Duodenum
25	chr2:191362200-191379200	Strong transcription	Dnd41	blood
26	chr2:191362800-191398200	Weak transcription	Fetal Brain Male	brain
27	chr2:191363000-191374800	Weak transcription	Colon Smooth Muscle	Colon
28	chr2:191363200-191372000	Weak transcription	Psoas Muscle	Psoas
29	chr2:191363600-191374200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr2:191364000-191372000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:191364000-191374000	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr2:191364200-191376200	Strong transcription	Primary T cells from cord blood	blood
33	chr2:191365000-191373400	Weak transcription	Placenta	Placenta
34	chr2:191365000-191383200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:191365200-191371600	Weak transcription	Spleen	Spleen
36	chr2:191365200-191377400	Weak transcription	Pancreas	Pancrea
37	chr2:191365200-191380000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:191365200-191398000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr2:191365400-191392400	Weak transcription	HepG2	liver
40	chr2:191365800-191397400	Weak transcription	Liver	Liver
41	chr2:191366400-191386400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:191366600-191381000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr2:191366800-191374800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr2:191367000-191371800	Strong transcription	GM12878-XiMat	blood
45	chr2:191367200-191393000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr2:191367400-191382400	Weak transcription	NHDF-Ad	bronchial
47	chr2:191367600-191377200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr2:191368000-191373000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr2:191368200-191374800	Weak transcription	Ovary	ovary
50	chr2:191368400-191376800	Weak transcription	Hela-S3	cervix

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