Variant report

Variant	rs13394110
Chromosome Location	chr2:100873975-100873976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:100873531..100875703-chr2:100970860..100973010,2	K562	blood:
2	chr2:100873599..100875237-chr2:100876970..100878624,2	MCF-7	breast:
3	chr2:100866864..100870366-chr2:100873270..100876644,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10170878	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10173499	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11886523	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12463633	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12464433	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12464505	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12467008	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12472141	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13024601	1.00[JPT][hapmap]
rs13397010	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13397337	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2309815	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2309818	1.00[JPT][hapmap]
rs2309819	1.00[JPT][hapmap]
rs2309820	1.00[JPT][hapmap]
rs2309821	1.00[JPT][hapmap]
rs2309825	1.00[JPT][hapmap]
rs2309826	1.00[JPT][hapmap]
rs2871341	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34044131	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4851281	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4851282	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55856206	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57328601	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60501704	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62148117	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62148118	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6542923	1.00[JPT][hapmap]
rs6707358	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6724490	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6727712	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6754867	1.00[JPT][hapmap]
rs6755791	1.00[JPT][hapmap]
rs72821119	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72821120	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72821122	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72821124	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72821125	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72821126	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72821130	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72821133	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7421891	1.00[JPT][hapmap]
rs7601873	1.00[JPT][hapmap]
rs7607170	1.00[JPT][hapmap]
rs7609376	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100864200-100879800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:100865800-100879800	Weak transcription	Right Atrium	heart
3	chr2:100873000-100875000	Enhancers	Fetal Brain Male	brain
4	chr2:100873000-100875200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:100873200-100874200	Enhancers	Fetal Brain Female	brain
6	chr2:100873200-100875600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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