Variant report

Variant	rs133953
Chromosome Location	chr22:33410992-33410993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs133940	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs133955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs133968	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs133976	0.81[ASN][1000 genomes]
rs241710	0.89[CHB][hapmap]
rs241713	0.89[CHB][hapmap]
rs241716	0.89[CHB][hapmap]
rs241720	0.88[CHB][hapmap]
rs241723	0.88[CHB][hapmap]
rs241734	0.89[CHB][hapmap]
rs470009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs470012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33402400-33414200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr22:33402600-33419400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr22:33402800-33414600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr22:33403000-33420000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr22:33403400-33414000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr22:33403600-33415600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr22:33403800-33414600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr22:33403800-33417600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr22:33405400-33414600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr22:33406400-33414600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr22:33407400-33417000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr22:33408200-33411400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr22:33410200-33411200	Active TSS	Placenta	Placenta
14	chr22:33410200-33413000	Weak transcription	HepG2	liver
15	chr22:33410400-33417200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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