Variant report

Variant	rs13395641
Chromosome Location	chr2:145952609-145952610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13390685	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13428809	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145949200-145956800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:145949400-145955000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:145951600-145953400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:145951600-145953600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:145951800-145952800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:145951800-145952800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:145951800-145953000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:145952000-145952800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:145952000-145953000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:145952200-145952800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr2:145952200-145952800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:145952400-145956400	Weak transcription	Fetal Kidney	kidney
13	chr2:145952600-145952800	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr2:145952600-145953000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:145952600-145956400	Weak transcription	Stomach Mucosa	stomach
16	chr2:145952600-145957800	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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