Variant report

Variant	rs133962
Chromosome Location	chr22:33418856-33418857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1012082	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs114509	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs133942	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs133943	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs133944	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs133945	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs133946	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs133948	0.95[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs133949	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs133956	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs133957	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs133959	0.89[ASN][1000 genomes]
rs133963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs133965	0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs133967	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs133970	0.80[JPT][hapmap]
rs133974	0.81[JPT][hapmap]
rs470006	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs470007	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs470008	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs470010	0.89[ASN][1000 genomes]
rs470011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs470013	0.80[JPT][hapmap]
rs5754371	0.82[ASN][1000 genomes]
rs713832	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71699	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs78506	0.89[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs86666	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33402600-33419400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr22:33403000-33420000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr22:33414400-33420600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr22:33414800-33422000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr22:33414800-33430600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr22:33415000-33434200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr22:33415800-33421800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr22:33417200-33424200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr22:33417400-33430800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr22:33417800-33419400	Enhancers	Primary B cells from peripheral blood	blood
11	chr22:33417800-33421800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr22:33418400-33430600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr22:33418600-33420200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr22:33418800-33419000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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