Variant report

Variant	rs13396920
Chromosome Location	chr2:169654063-169654064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	UBTF	chr2:169653881-169654076	K562	blood:	n/a	n/a
2	MYC	chr2:169653745-169654140	K562	blood:	n/a	n/a
3	CEBPB	chr2:169653784-169654268	K562	blood:	n/a	n/a
4	JUND	chr2:169653784-169654120	K562	blood:	n/a	n/a
5	TEAD4	chr2:169653615-169654442	K562	blood:	n/a	n/a
6	RCOR1	chr2:169653832-169654068	K562	blood:	n/a	n/a
7	FOXA2	chr2:169653821-169654085	HepG2	liver:	n/a	n/a
8	MAZ	chr2:169653780-169654123	K562	blood:	n/a	n/a
9	ZMIZ1	chr2:169653795-169654198	K562	blood:	n/a	n/a
10	EP300	chr2:169653939-169654087	GM12878	blood:	n/a	n/a
11	TBP	chr2:169653732-169654114	K562	blood:	n/a	n/a
12	CBX3	chr2:169653716-169654273	K562	blood:	n/a	n/a
13	CUX1	chr2:169653826-169654137	K562	blood:	n/a	n/a
14	TBL1XR1	chr2:169653145-169654065	K562	blood:	n/a	n/a
15	IRF1	chr2:169653154-169654597	K562	blood:	n/a	chr2:169653411-169653421 chr2:169653409-169653423 chr2:169653411-169653425
16	RCOR1	chr2:169652482-169654167	K562	blood:	n/a	n/a
17	EP300	chr2:169653065-169654357	K562	blood:	n/a	chr2:169654138-169654152
18	GATA1	chr2:169653666-169654261	PBDE	blood:	n/a	n/a
19	TRIM28	chr2:169653036-169654150	K562	blood:	n/a	n/a
20	GTF3C2	chr2:169653205-169654128	K562	blood:	n/a	n/a
21	TAL1	chr2:169653745-169654116	K562	blood:	n/a	n/a
22	ZNF384	chr2:169653211-169654074	K562	blood:	n/a	n/a
23	NR2F2	chr2:169653058-169654100	K562	blood:	n/a	n/a
24	NR2F2	chr2:169652375-169654326	K562	blood:	n/a	n/a
25	MYC	chr2:169653124-169654159	K562	blood:	n/a	n/a
26	MAX	chr2:169653733-169654150	K562	blood:	n/a	n/a
27	MAX	chr2:169653687-169654393	K562	blood:	n/a	n/a
28	HMGN3	chr2:169653990-169654086	K562	blood:	n/a	n/a

Variant related genes	Relation type
NOSTRIN	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10176220	1.00[AMR][1000 genomes]
rs11898531	1.00[AMR][1000 genomes]
rs11899247	1.00[AMR][1000 genomes]
rs13383882	1.00[AMR][1000 genomes]
rs13384117	1.00[AMR][1000 genomes]
rs13402157	1.00[AMR][1000 genomes]
rs28652913	1.00[AMR][1000 genomes]
rs28815499	1.00[AMR][1000 genomes]
rs73969961	1.00[AMR][1000 genomes]
rs73969979	1.00[AMR][1000 genomes]
rs9287902	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169638200-169654600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:169645200-169656000	Weak transcription	Gastric	stomach
3	chr2:169652000-169659000	Weak transcription	Fetal Kidney	kidney
4	chr2:169652200-169658800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:169652400-169657200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:169652600-169654200	Flanking Active TSS	K562	blood
7	chr2:169652600-169656200	Enhancers	Spleen	Spleen
8	chr2:169652600-169656800	Enhancers	Left Ventricle	heart
9	chr2:169652800-169654200	Enhancers	Fetal Muscle Leg	muscle
10	chr2:169652800-169656000	Weak transcription	Lung	lung
11	chr2:169653000-169656400	Weak transcription	Pancreas	Pancrea
12	chr2:169653000-169658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:169653000-169658400	Weak transcription	Fetal Stomach	stomach
14	chr2:169653000-169658800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:169653000-169658800	Weak transcription	Ovary	ovary
16	chr2:169653000-169659000	Weak transcription	Right Ventricle	heart
17	chr2:169653000-169659200	Enhancers	Fetal Intestine Small	intestine
18	chr2:169653200-169656200	Enhancers	Fetal Intestine Large	intestine
19	chr2:169653400-169655800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr2:169653600-169654200	Weak transcription	Stomach Mucosa	stomach
21	chr2:169653600-169654800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr2:169653600-169654800	Weak transcription	Adipose Nuclei	Adipose
23	chr2:169653600-169654800	Weak transcription	HUVEC	blood vessel
24	chr2:169653800-169655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr2:169653800-169655800	Enhancers	Fetal Heart	heart
26	chr2:169653800-169655800	Weak transcription	Right Atrium	heart
27	chr2:169653800-169658400	Weak transcription	Placenta	Placenta
28	chr2:169654000-169654400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links