The 2.0 version of rSNPBase

Variant report

Variant rs13397317
Chromosome Location chr2:173205631-173205632
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:173199600-173208000 Enhancers Stomach Mucosa stomach
2 chr2:173202400-173207200 Weak transcription iPS-18 Cell Line embryonic stem cell
3 chr2:173203600-173208400 Enhancers Fetal Intestine Large intestine
4 chr2:173204000-173205800 Enhancers Breast Myoepithelial Primary Cells Breast
5 chr2:173204000-173205800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
6 chr2:173204000-173206200 Flanking Active TSS HepG2 liver
7 chr2:173204200-173205800 Enhancers Adipose Nuclei Adipose
8 chr2:173204200-173206000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr2:173204200-173206000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr2:173204200-173206200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr2:173204400-173205800 Flanking Active TSS Liver Liver
12 chr2:173204400-173205800 Flanking Active TSS NHEK skin
13 chr2:173204600-173205800 Enhancers Brain Cingulate Gyrus brain
14 chr2:173204600-173206000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
15 chr2:173204600-173206000 Weak transcription Ovary ovary
16 chr2:173204600-173206800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr2:173204600-173206800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr2:173204600-173206800 Weak transcription Colonic Mucosa Colon
19 chr2:173204600-173206800 Weak transcription Fetal Muscle Trunk muscle
20 chr2:173204600-173206800 Weak transcription Gastric stomach
21 chr2:173204600-173206800 Weak transcription Lung lung
22 chr2:173204600-173207000 Weak transcription H9 Cell Line embryonic stem cell
23 chr2:173204600-173207000 Weak transcription Spleen Spleen
24 chr2:173204600-173218400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr2:173204800-173206000 Enhancers HSMMtube muscle
26 chr2:173204800-173206800 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr2:173204800-173206800 Weak transcription Fetal Muscle Leg muscle
28 chr2:173204800-173206800 Weak transcription Pancreas Pancrea
29 chr2:173204800-173206800 Weak transcription Right Atrium heart
30 chr2:173205000-173205800 Weak transcription Fetal Thymus thymus
31 chr2:173205000-173206600 Weak transcription Brain Substantia Nigra brain
32 chr2:173205000-173206800 Weak transcription Left Ventricle heart
33 chr2:173205200-173205800 Flanking Active TSS Rectal Mucosa Donor 31 rectum
34 chr2:173205200-173205800 Active TSS A549 lung
35 chr2:173205200-173206400 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr2:173205200-173206800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr2:173205200-173207400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr2:173205200-173207400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr2:173205200-173209000 Weak transcription Brain Anterior Caudate brain
40 chr2:173205400-173205800 Enhancers Primary T cells from cord blood blood
41 chr2:173205400-173205800 Enhancers Primary T helper naive cells from peripheral blood blood
42 chr2:173205400-173205800 Enhancers Primary T helper naive cells fromperipheralblood blood
43 chr2:173205400-173205800 Enhancers Skeletal Muscle Male skeletal muscle
44 chr2:173205400-173205800 Enhancers NHDF-Ad bronchial
45 chr2:173205400-173206000 Enhancers Primary monocytes fromperipheralblood blood
46 chr2:173205400-173206000 Enhancers Primary hematopoietic stem cells blood
47 chr2:173205400-173206200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr2:173205400-173206200 Enhancers HMEC breast
49 chr2:173205400-173206200 Enhancers Osteobl bone
50 chr2:173205400-173206800 Weak transcription Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015