Variant report

Variant	rs13397353
Chromosome Location	chr2:234699046-234699047
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13397354	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv1811811	chr2:234633964-234709430	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv527330	chr2:234688036-234702905	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv584706	chr2:234698097-234699242	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv10212	chr2:234698279-234701274	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv11552	chr2:234698752-234699856	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv584707	chr2:234698776-234699346	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3488412	chr2:234698909-234699450	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3488413	chr2:234698909-234699450	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3460957	chr2:234698963-234699429	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3331186	chr2:234698991-234699462	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2332178	chr2:234698995-234699471	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3427806	chr2:234699010-234699428	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3372604	chr2:234699016-234699402	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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