Variant report

Variant	rs1339873
Chromosome Location	chr1:222213123-222213124
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1470233	0.85[ASN][1000 genomes]
rs2584314	0.85[ASN][1000 genomes]
rs2584317	0.87[ASN][1000 genomes]
rs2584318	0.87[ASN][1000 genomes]
rs2584319	0.87[ASN][1000 genomes]
rs2584320	0.86[ASN][1000 genomes]
rs2584321	0.84[ASN][1000 genomes]
rs2584322	0.84[ASN][1000 genomes]
rs2584323	0.84[ASN][1000 genomes]
rs2584324	0.84[ASN][1000 genomes]
rs2790744	0.89[ASN][1000 genomes]
rs2790745	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2790748	0.86[ASN][1000 genomes]
rs2800849	0.86[ASN][1000 genomes]
rs2800861	0.88[ASN][1000 genomes]
rs2800866	0.89[ASN][1000 genomes]
rs3014719	0.83[ASN][1000 genomes]
rs7538392	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222195000-222216000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:222204200-222216600	Weak transcription	Aorta	Aorta
3	chr1:222207000-222217200	Enhancers	Fetal Heart	heart
4	chr1:222208600-222213200	Weak transcription	Psoas Muscle	Psoas
5	chr1:222211200-222213400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:222211200-222215200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:222211200-222216600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:222211400-222214000	Enhancers	Right Atrium	heart
9	chr1:222211400-222215200	Weak transcription	Osteobl	bone
10	chr1:222211400-222216800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:222211600-222214400	Enhancers	Left Ventricle	heart
12	chr1:222211800-222215200	Weak transcription	HSMMtube	muscle
13	chr1:222212600-222214600	Enhancers	Fetal Muscle Leg	muscle
14	chr1:222212800-222214000	Enhancers	Fetal Brain Male	brain
15	chr1:222212800-222214600	Enhancers	Right Ventricle	heart
16	chr1:222212800-222215200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:222212800-222216600	Weak transcription	Liver	Liver
18	chr1:222213000-222213200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr1:222213000-222214200	Active TSS	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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