Variant report

Variant	rs13399871
Chromosome Location	chr2:190783398-190783399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10169680	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10183082	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10497707	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13408737	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13409109	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13421595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16832146	0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1982475	0.88[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2066457	1.00[MEX][hapmap]
rs28544977	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5742917	1.00[MEX][hapmap]
rs5743173	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743193	0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743203	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6721150	1.00[AMR][1000 genomes]
rs73042372	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73042373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961542	chr2:190780134-190789823	Inactive region	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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