Variant report

Variant	rs13400268
Chromosome Location	chr2:169772640-169772641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10176348	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10179117	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10186069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13394065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13431683	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2232314	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6715133	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs6743741	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583599	chr2:169664227-169903096	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv459943	chr2:169756930-169799010	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv583600	chr2:169756930-169799010	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169769800-169773400	Enhancers	Fetal Brain Female	brain
2	chr2:169770600-169778600	Weak transcription	Liver	Liver
3	chr2:169771600-169773200	Enhancers	Brain Germinal Matrix	brain
4	chr2:169772000-169773200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:169772400-169773000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:169772400-169773200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr2:169772600-169772800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr2:169772600-169773000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr2:169772600-169773000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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