Variant report

Variant	rs13400660
Chromosome Location	chr2:11041643-11041644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11038977..11043256-chr2:11044026..11047628,4	MCF-7	breast:
2	chr2:11035883..11038116-chr2:11040212..11042118,2	K562	blood:
3	chr2:11040441..11043101-chr2:11053459..11055088,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10192314	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1317760	0.87[EUR][1000 genomes]
rs13384495	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13387419	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13396519	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7605799	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580969	chr2:11033567-11081645	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv873662	chr2:11035430-11061156	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv521177	chr2:11040146-11066699	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11031200-11044800	Weak transcription	Right Ventricle	heart
2	chr2:11038400-11041800	Weak transcription	Small Intestine	intestine
3	chr2:11040400-11041800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:11040400-11041800	Enhancers	HMEC	breast
5	chr2:11040400-11042000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:11040400-11042000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr2:11040600-11042000	Enhancers	Placenta	Placenta
8	chr2:11040800-11041800	Enhancers	Stomach Mucosa	stomach
9	chr2:11040800-11041800	Enhancers	Hela-S3	cervix
10	chr2:11040800-11042000	Enhancers	Duodenum Mucosa	Duodenum
11	chr2:11041000-11044600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:11041200-11041800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:11041200-11041800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:11041200-11041800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:11041200-11041800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr2:11041200-11041800	Flanking Active TSS	A549	lung
17	chr2:11041200-11042000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:11041200-11042000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:11041200-11042000	Enhancers	HUVEC	blood vessel
20	chr2:11041200-11042000	Enhancers	NHEK	skin
21	chr2:11041400-11041800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:11041400-11041800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr2:11041400-11042000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr2:11041400-11042000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:11041400-11042000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr2:11041400-11042000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr2:11041600-11041800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr2:11041600-11042000	Enhancers	HepG2	liver

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