Variant report

Variant	rs13401032
Chromosome Location	chr2:115611836-115611837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13410754	0.90[AFR][1000 genomes]
rs13419904	0.90[AFR][1000 genomes]
rs17040472	1.00[AMR][1000 genomes]
rs17043347	1.00[AMR][1000 genomes]
rs17043375	1.00[AMR][1000 genomes]
rs17043379	1.00[AMR][1000 genomes]
rs17043382	1.00[AMR][1000 genomes]
rs28408949	0.90[AFR][1000 genomes]
rs28605218	0.90[AFR][1000 genomes]
rs34919348	1.00[AMR][1000 genomes]
rs72955626	1.00[AMR][1000 genomes]
rs72955637	1.00[AMR][1000 genomes]
rs72955641	1.00[AMR][1000 genomes]
rs72955645	1.00[AMR][1000 genomes]
rs72955660	1.00[AMR][1000 genomes]
rs72955672	1.00[AMR][1000 genomes]
rs72955673	1.00[AMR][1000 genomes]
rs72955686	1.00[AMR][1000 genomes]
rs72955695	1.00[AMR][1000 genomes]
rs72955698	1.00[AMR][1000 genomes]
rs72955701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431502	chr2:115139566-115617936	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv874916	chr2:115589606-115647583	Weak transcription Active TSS Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115611400-115612200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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