Variant report

Variant	rs13401202
Chromosome Location	chr2:153205069-153205070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10166701	1.00[ASN][1000 genomes]
rs10171204	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10179391	0.81[EUR][1000 genomes]
rs10181910	1.00[ASN][1000 genomes]
rs10182993	1.00[ASN][1000 genomes]
rs10188437	1.00[ASN][1000 genomes]
rs10195727	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10931054	1.00[EUR][1000 genomes]
rs12693278	1.00[ASN][1000 genomes]
rs13382381	1.00[ASN][1000 genomes]
rs13382410	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13386095	1.00[ASN][1000 genomes]
rs13394982	1.00[ASN][1000 genomes]
rs13398440	0.81[EUR][1000 genomes]
rs13408985	1.00[ASN][1000 genomes]
rs13420003	1.00[ASN][1000 genomes]
rs13425532	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2346199	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28524736	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28581765	1.00[ASN][1000 genomes]
rs35406869	1.00[ASN][1000 genomes]
rs6434003	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6434017	0.81[EUR][1000 genomes]
rs6707033	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6718081	0.81[EUR][1000 genomes]
rs6718584	0.81[EUR][1000 genomes]
rs6718773	0.82[EUR][1000 genomes]
rs6726207	1.00[ASN][1000 genomes]
rs6733002	1.00[EUR][1000 genomes]
rs6740909	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6742020	1.00[ASN][1000 genomes]
rs6742139	1.00[ASN][1000 genomes]
rs6751151	1.00[EUR][1000 genomes]
rs6753703	1.00[ASN][1000 genomes]
rs7590270	1.00[ASN][1000 genomes]
rs7600978	1.00[ASN][1000 genomes]
rs7604840	1.00[ASN][1000 genomes]
rs9288079	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693434	chr2:152998467-153208713	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2436407	chr2:153204888-153206437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153193800-153211000	Weak transcription	HSMMtube	muscle
2	chr2:153194000-153206600	Weak transcription	Pancreas	Pancrea
3	chr2:153194200-153224400	Weak transcription	Aorta	Aorta
4	chr2:153194600-153205800	Weak transcription	Left Ventricle	heart
5	chr2:153194600-153206200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:153194600-153206400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:153194600-153206400	Weak transcription	Lung	lung
8	chr2:153194600-153206600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr2:153194600-153210400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:153194600-153210400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:153194600-153214600	Weak transcription	Gastric	stomach
12	chr2:153196000-153224800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr2:153196600-153211800	Weak transcription	Small Intestine	intestine
14	chr2:153197000-153207200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:153198000-153205800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr2:153198000-153206200	Weak transcription	Fetal Brain Male	brain
17	chr2:153198000-153206200	Genic enhancers	HepG2	liver
18	chr2:153198000-153207400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:153198200-153214000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr2:153198600-153214400	Weak transcription	Right Atrium	heart
21	chr2:153199400-153212200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr2:153199800-153211800	Weak transcription	Fetal Kidney	kidney
23	chr2:153200400-153211800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr2:153200400-153215200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr2:153200600-153205200	Enhancers	Brain Hippocampus Middle	brain
26	chr2:153200600-153210400	Weak transcription	Ovary	ovary
27	chr2:153200600-153225600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr2:153200800-153209200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr2:153200800-153210000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:153200800-153210400	Weak transcription	NHDF-Ad	bronchial
31	chr2:153200800-153210600	Weak transcription	Psoas Muscle	Psoas
32	chr2:153200800-153212600	Weak transcription	Fetal Intestine Large	intestine
33	chr2:153200800-153215800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr2:153200800-153222000	Weak transcription	Placenta	Placenta
35	chr2:153200800-153225800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr2:153201000-153205800	Weak transcription	Fetal Muscle Leg	muscle
37	chr2:153201400-153206200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr2:153201600-153208400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:153201600-153216000	Weak transcription	Fetal Lung	lung
40	chr2:153202000-153206400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr2:153202200-153206200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr2:153202400-153211000	Weak transcription	NHEK	skin
43	chr2:153202400-153219800	Weak transcription	Hela-S3	cervix
44	chr2:153202400-153225600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr2:153203000-153206800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr2:153203000-153223800	Weak transcription	Fetal Stomach	stomach
47	chr2:153203000-153233000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr2:153203200-153205400	Enhancers	HMEC	breast
49	chr2:153203200-153206600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr2:153203200-153207200	Weak transcription	Fetal Intestine Small	intestine

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