Variant report

Variant	rs13401325
Chromosome Location	chr2:206080674-206080675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10182802	0.89[ASN][1000 genomes]
rs10191595	0.87[ASN][1000 genomes]
rs10194988	0.89[ASN][1000 genomes]
rs10206071	0.89[ASN][1000 genomes]
rs11681930	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11898967	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11900263	0.84[AMR][1000 genomes]
rs1921795	0.80[ASN][1000 genomes]
rs1921797	0.80[ASN][1000 genomes]
rs58915278	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6721537	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6758662	0.88[ASN][1000 genomes]
rs6758774	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	nsv875730	chr2:206057649-206093367	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206058800-206081400	Weak transcription	Ovary	ovary
2	chr2:206075200-206100000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:206079400-206081600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:206079800-206080800	Weak transcription	Fetal Lung	lung
5	chr2:206079800-206084400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:206080200-206081200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:206080200-206081400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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