Variant report

Variant	rs13401424
Chromosome Location	chr2:21448295-21448296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10168689	1.00[AMR][1000 genomes]
rs10198106	1.00[EUR][1000 genomes]
rs12720839	1.00[AMR][1000 genomes]
rs13383542	1.00[AMR][1000 genomes]
rs13385509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13388452	1.00[AMR][1000 genomes]
rs13394570	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13396345	1.00[EUR][1000 genomes]
rs13414936	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13421325	1.00[EUR][1000 genomes]
rs13429004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9808271	1.00[AMR][1000 genomes]
rs9808349	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21445600-21448800	Weak transcription	Spleen	Spleen
2	chr2:21446400-21448800	Weak transcription	Pancreas	Pancrea
3	chr2:21446400-21451200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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