Variant report

Variant	rs13401466
Chromosome Location	chr2:234991518-234991519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10929333	0.81[EUR][1000 genomes]
rs11562947	0.88[EUR][1000 genomes]
rs11563197	0.90[CEU][hapmap]
rs17865708	0.91[EUR][1000 genomes]
rs17866610	0.90[CEU][hapmap]
rs17869099	0.88[EUR][1000 genomes]
rs28904000	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv834571	chr2:234929288-235110332	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv998149	chr2:234978261-235086951	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv17447	chr2:234991345-234994872	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234987000-234991800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:234990400-234991600	Enhancers	Stomach Mucosa	stomach
3	chr2:234990400-234991600	Enhancers	HMEC	breast
4	chr2:234990400-234992200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:234990400-234993000	Enhancers	Pancreas	Pancrea
6	chr2:234990600-234991600	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr2:234990600-234991800	Enhancers	HepG2	liver
8	chr2:234990600-234992400	Enhancers	Fetal Kidney	kidney
9	chr2:234990600-234992600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:234990800-234991800	Weak transcription	Gastric	stomach
11	chr2:234991000-234992600	Enhancers	Liver	Liver
12	chr2:234991200-234992000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr2:234991400-234992000	Enhancers	A549	lung
14	chr2:234991400-234997400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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