Variant report

Variant	rs13402756
Chromosome Location	chr2:85957074-85957075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85956902..85958870-chr2:85969528..85972246,2	K562	blood:
2	chr2:85955595..85957858-chr2:85959613..85962219,2	K562	blood:
3	chr2:85955595..85958581-chr2:85959613..85963230,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10175441	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10176095	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10178646	0.90[EUR][1000 genomes]
rs13386539	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13389806	0.90[EUR][1000 genomes]
rs13418020	1.00[EUR][1000 genomes]
rs13431188	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2118400	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874468	chr2:85926598-86001255	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv527770	chr2:85949396-85962551	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85941200-85967400	Weak transcription	Esophagus	oesophagus
2	chr2:85951000-85959600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:85952400-85960600	Weak transcription	Right Atrium	heart
4	chr2:85952600-85962400	Weak transcription	Fetal Kidney	kidney
5	chr2:85955200-85966400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr2:85955600-85957600	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr2:85955600-85958800	Enhancers	A549	lung
8	chr2:85955800-85957200	Enhancers	Brain Hippocampus Middle	brain
9	chr2:85956000-85957200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:85956000-85957200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:85956000-85957200	Enhancers	HSMM	muscle
12	chr2:85956200-85958000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr2:85956400-85958600	Enhancers	Placenta	Placenta
14	chr2:85956400-85959600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:85956600-85957400	Enhancers	Right Ventricle	heart
16	chr2:85956600-85958400	Weak transcription	Fetal Lung	lung
17	chr2:85956600-85958600	Weak transcription	Fetal Heart	heart
18	chr2:85956600-85958800	Weak transcription	HSMMtube	muscle
19	chr2:85956600-85959800	Weak transcription	Stomach Mucosa	stomach
20	chr2:85956600-85960800	Weak transcription	Left Ventricle	heart
21	chr2:85956600-85960800	Enhancers	Hela-S3	cervix
22	chr2:85956600-85961000	Weak transcription	HUVEC	blood vessel
23	chr2:85956600-85963000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr2:85956600-85964000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr2:85956800-85958800	Weak transcription	Brain Anterior Caudate	brain
26	chr2:85956800-85959600	Weak transcription	Brain Angular Gyrus	brain
27	chr2:85956800-85959600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr2:85956800-85959600	Weak transcription	Fetal Thymus	thymus
29	chr2:85956800-85959600	Weak transcription	Lung	lung
30	chr2:85956800-85959800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:85956800-85959800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr2:85956800-85959800	Weak transcription	Colonic Mucosa	Colon
33	chr2:85956800-85959800	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr2:85956800-85960200	Weak transcription	Colon Smooth Muscle	Colon
35	chr2:85956800-85961800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr2:85956800-85962200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:85956800-85963000	Weak transcription	Adipose Nuclei	Adipose
38	chr2:85956800-85963000	Weak transcription	NHLF	lung
39	chr2:85957000-85957600	Enhancers	Psoas Muscle	Psoas
40	chr2:85957000-85958600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr2:85957000-85959600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr2:85957000-85959600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr2:85957000-85959600	Weak transcription	Brain Substantia Nigra	brain
44	chr2:85957000-85959600	Weak transcription	NHDF-Ad	bronchial
45	chr2:85957000-85962000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr2:85957000-85962200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr2:85957000-85962200	Weak transcription	Osteobl	bone

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