Variant report

Variant	rs13403316
Chromosome Location	chr2:168281264-168281265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10183428	1.00[ASN][1000 genomes]
rs10205921	1.00[ASN][1000 genomes]
rs13419805	1.00[ASN][1000 genomes]
rs3749002	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2760556	chr2:168259049-168283244	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168278000-168292400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:168278600-168283000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr2:168279000-168284200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:168279400-168284400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:168279400-168284400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:168279600-168282200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:168279600-168282400	Enhancers	Fetal Brain Male	brain
8	chr2:168279800-168282400	Enhancers	Fetal Brain Female	brain
9	chr2:168280200-168282000	Enhancers	Brain Germinal Matrix	brain
10	chr2:168280800-168281800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr2:168280800-168287200	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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