Variant report

Variant	rs13404036
Chromosome Location	chr2:145766989-145766990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:145766027..145767852-chr2:145771285..145773781,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9973695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834398	chr2:145659419-145830156	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145765200-145770200	Weak transcription	Hela-S3	cervix
2	chr2:145765600-145769200	Weak transcription	Right Atrium	heart
3	chr2:145765600-145769400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:145765600-145769800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr2:145765600-145770000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:145765600-145770400	Weak transcription	Aorta	Aorta
7	chr2:145765800-145768000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:145765800-145769200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:145765800-145769800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:145765800-145769800	Weak transcription	Fetal Lung	lung
11	chr2:145765800-145769800	Weak transcription	HSMMtube	muscle
12	chr2:145766000-145768000	Weak transcription	Fetal Heart	heart
13	chr2:145766000-145768200	Weak transcription	A549	lung
14	chr2:145766000-145769600	Weak transcription	HSMM	muscle
15	chr2:145766000-145769800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:145766000-145769800	Weak transcription	NH-A	brain
17	chr2:145766000-145769800	Weak transcription	Osteobl	bone
18	chr2:145766000-145770000	Weak transcription	HMEC	breast
19	chr2:145766200-145769000	Weak transcription	HUVEC	blood vessel
20	chr2:145766200-145769400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr2:145766200-145770000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:145766200-145770000	Weak transcription	NHDF-Ad	bronchial

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