Variant report

Variant	rs13405349
Chromosome Location	chr2:212524248-212524249
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10166540	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10174084	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13410206	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13418752	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13423577	0.84[EUR][1000 genomes]
rs28593530	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6719664	0.96[EUR][1000 genomes]
rs72945016	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72945020	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72945021	0.94[EUR][1000 genomes]
rs72945023	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754366	chr2:212470494-212541494	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
2	nsv460070	chr2:212492764-212541377	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
3	nsv584322	chr2:212492764-212541377	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
2	chr2:212514600-212527600	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:212514800-212528800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:212520200-212527800	Weak transcription	Brain Anterior Caudate	brain
5	chr2:212521200-212540400	Weak transcription	Fetal Heart	heart
6	chr2:212521400-212540800	Weak transcription	Fetal Kidney	kidney
7	chr2:212522800-212527200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:212522800-212537800	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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