Variant report
| Variant | rs13405590 |
|---|---|
| Chromosome Location | chr2:7417256-7417257 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:7410454..7413137-chr2:7415819..7418028,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10205728 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10929475 | 0.84[ASN][1000 genomes] |
| rs10929476 | 0.84[ASN][1000 genomes] |
| rs11678656 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11884068 | 0.84[ASN][1000 genomes] |
| rs11884070 | 0.84[ASN][1000 genomes] |
| rs11886727 | 0.84[ASN][1000 genomes] |
| rs11901709 | 0.84[ASN][1000 genomes] |
| rs12473073 | 0.84[ASN][1000 genomes] |
| rs12473177 | 0.84[ASN][1000 genomes] |
| rs12473199 | 0.84[ASN][1000 genomes] |
| rs12478133 | 0.84[ASN][1000 genomes] |
| rs12990139 | 0.84[ASN][1000 genomes] |
| rs13007576 | 0.83[ASN][1000 genomes] |
| rs13013561 | 0.84[ASN][1000 genomes] |
| rs13025095 | 0.84[ASN][1000 genomes] |
| rs1430298 | 0.84[ASN][1000 genomes] |
| rs4668534 | 0.86[ASN][1000 genomes] |
| rs4668535 | 0.85[ASN][1000 genomes] |
| rs4669173 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4669175 | 0.80[ASN][1000 genomes] |
| rs57998976 | 0.86[ASN][1000 genomes] |
| rs6756373 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv915888 | chr2:7197783-7461967 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv833337 | chr2:7337273-7521146 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1006240 | chr2:7408292-7664557 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv535578 | chr2:7408292-7664557 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:7400200-7428600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 2 | chr2:7415200-7418800 | Weak transcription | Pancreas | Pancrea |
