Variant report

Variant	rs13405816
Chromosome Location	chr2:180347713-180347714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10084234	1.00[AMR][1000 genomes]
rs10166378	1.00[AMR][1000 genomes]
rs10170816	1.00[LWK][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10174356	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10185505	1.00[AMR][1000 genomes]
rs10195249	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13384060	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13418388	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28704741	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3106691	1.00[CHD][hapmap]
rs73037365	1.00[AFR][1000 genomes]
rs73037372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180325200-180351400	Weak transcription	Psoas Muscle	Psoas
3	chr2:180332800-180352600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:180341200-180350600	Strong transcription	Liver	Liver
5	chr2:180345800-180350200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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