Variant report

Variant	rs13406734
Chromosome Location	chr2:234307086-234307087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10181037	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10190365	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10190816	0.83[AMR][1000 genomes]
rs13403667	0.85[AMR][1000 genomes]
rs13406844	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57020060	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59768987	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584700	chr2:234199401-234364426	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529419	chr2:234229606-234670426	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234264600-234307600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:234270000-234322400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:234272800-234313200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:234277600-234322200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:234289000-234307600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:234293200-234307600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:234293800-234308000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:234293800-234308000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:234294600-234318800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr2:234295400-234313000	Weak transcription	Small Intestine	intestine
11	chr2:234295600-234307600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:234295800-234308000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr2:234295800-234318200	Weak transcription	K562	blood
14	chr2:234296400-234307600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr2:234296600-234307800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr2:234296800-234307800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:234296800-234308200	Weak transcription	Stomach Mucosa	stomach
18	chr2:234296800-234309000	Weak transcription	Esophagus	oesophagus
19	chr2:234297200-234307200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr2:234297200-234307800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:234297200-234307800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:234297200-234307800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr2:234297200-234308000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:234297200-234308000	Weak transcription	Left Ventricle	heart
25	chr2:234297200-234308800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:234297200-234310600	Weak transcription	Fetal Brain Female	brain
27	chr2:234297200-234310600	Weak transcription	HUVEC	blood vessel
28	chr2:234297200-234311000	Weak transcription	Fetal Brain Male	brain
29	chr2:234297200-234311400	Weak transcription	Brain Substantia Nigra	brain
30	chr2:234297200-234314600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr2:234297200-234316800	Weak transcription	Aorta	Aorta
32	chr2:234297200-234317000	Weak transcription	Placenta	Placenta
33	chr2:234297200-234317000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr2:234297200-234317200	Weak transcription	Pancreas	Pancrea
35	chr2:234297200-234317400	Weak transcription	Brain Angular Gyrus	brain
36	chr2:234297200-234317400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr2:234297200-234318600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr2:234297200-234319000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:234297200-234319000	Weak transcription	Fetal Kidney	kidney
40	chr2:234297200-234319400	Weak transcription	Brain Hippocampus Middle	brain
41	chr2:234297200-234322000	Weak transcription	Hela-S3	cervix
42	chr2:234297200-234322200	Weak transcription	Brain Anterior Caudate	brain
43	chr2:234297400-234307800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr2:234297400-234309600	Weak transcription	Brain Germinal Matrix	brain
45	chr2:234297400-234316200	Weak transcription	Fetal Lung	lung
46	chr2:234298000-234314600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr2:234298000-234317200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr2:234298200-234308200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr2:234298600-234316200	Weak transcription	Colon Smooth Muscle	Colon
50	chr2:234299000-234307800	Strong transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links