Variant report

Variant	rs13407580
Chromosome Location	chr2:35674479-35674480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10166947	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10196368	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10197899	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10207800	0.81[EUR][1000 genomes]
rs10207961	0.84[EUR][1000 genomes]
rs11889594	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12712438	0.91[EUR][1000 genomes]
rs13383899	0.82[EUR][1000 genomes]
rs13395438	0.82[EUR][1000 genomes]
rs13408010	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28438766	0.81[EUR][1000 genomes]
rs34935525	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35251957	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35478435	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35873063	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61231588	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6735007	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6735463	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6753443	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs71451222	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010722	chr2:35072575-35950219	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv519522	chr2:35425529-35861883	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1008651	chr2:35469467-35896486	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv999139	chr2:35483033-35860024	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv535636	chr2:35483033-35860024	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1005352	chr2:35509710-35680146	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv535637	chr2:35509710-35680146	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv873848	chr2:35641532-35973963	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv581402	chr2:35670916-35702533	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1014577	chr2:35672382-35714924	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:35668600-35680200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:35673200-35674600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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