Variant report

Variant	rs1340760
Chromosome Location	chr1:70153718-70153719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10489554	0.84[JPT][hapmap]
rs11209514	0.84[JPT][hapmap]
rs11209515	0.90[JPT][hapmap]
rs11209516	0.84[JPT][hapmap]
rs12022970	0.84[JPT][hapmap]
rs12025862	0.85[JPT][hapmap]
rs12035984	0.85[JPT][hapmap]
rs12118129	0.84[JPT][hapmap]
rs12133092	0.84[JPT][hapmap]
rs58546454	0.88[ASN][1000 genomes]
rs7537453	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384194	chr1:69885024-70275430	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830126	chr1:70014879-70167979	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1010921	chr1:70148694-70182578	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70137200-70167400	Weak transcription	Fetal Brain Male	brain
2	chr1:70137400-70160400	Weak transcription	Fetal Brain Female	brain
3	chr1:70138600-70155600	Weak transcription	Brain Anterior Caudate	brain
4	chr1:70146200-70154000	Weak transcription	Brain Germinal Matrix	brain
5	chr1:70147800-70162400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:70153000-70163000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:70153600-70154000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:70153600-70157400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr1:70153600-70158200	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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