Variant report

Variant	rs13407894
Chromosome Location	chr2:72902327-72902328
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72901546..72903873-chr2:72916111..72918469,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10182290	1.00[YRI][hapmap]
rs12476130	1.00[YRI][hapmap]
rs12713773	1.00[YRI][hapmap]
rs1446893	1.00[YRI][hapmap]
rs1711838	1.00[YRI][hapmap]
rs6546779	1.00[YRI][hapmap]
rs683328	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72858400-72904000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:72866800-72902600	Weak transcription	Left Ventricle	heart
3	chr2:72873000-72903800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:72892000-72905400	Weak transcription	Pancreas	Pancrea
5	chr2:72895400-72902600	Weak transcription	Fetal Lung	lung
6	chr2:72895800-72903400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:72896000-72905400	Weak transcription	Psoas Muscle	Psoas
8	chr2:72896800-72903800	Weak transcription	NHEK	skin
9	chr2:72896800-72943000	Weak transcription	Primary T cells from cord blood	blood
10	chr2:72897000-72903400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:72897000-72903400	Weak transcription	NHDF-Ad	bronchial
12	chr2:72897000-72904000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:72897000-72905200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr2:72897000-72912600	Weak transcription	NHLF	lung
15	chr2:72897800-72909800	Weak transcription	Brain Germinal Matrix	brain
16	chr2:72899400-72903400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:72899400-72905400	Weak transcription	Right Ventricle	heart
18	chr2:72900000-72903400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:72900000-72905400	Weak transcription	Small Intestine	intestine
20	chr2:72900200-72911800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr2:72900600-72902600	Weak transcription	Ovary	ovary
22	chr2:72900600-72903000	Weak transcription	Brain Hippocampus Middle	brain
23	chr2:72900800-72903400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr2:72901400-72902400	Weak transcription	Fetal Heart	heart
25	chr2:72901600-72902600	Enhancers	Duodenum Mucosa	Duodenum
26	chr2:72901600-72903200	Enhancers	A549	lung
27	chr2:72901600-72905600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr2:72901600-72919200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr2:72901800-72902400	Weak transcription	Stomach Mucosa	stomach
30	chr2:72901800-72904200	Weak transcription	HMEC	breast
31	chr2:72901800-72905000	Enhancers	HepG2	liver
32	chr2:72902200-72902400	Enhancers	Fetal Kidney	kidney
33	chr2:72902200-72902600	Weak transcription	Fetal Intestine Small	intestine
34	chr2:72902200-72902800	Enhancers	Liver	Liver
35	chr2:72902200-72904200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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