Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12870568	0.84[ASN][1000 genomes]
rs1340800	0.91[EUR][1000 genomes]
rs1417463	0.83[EUR][1000 genomes]
rs1934849	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2153566	0.90[EUR][1000 genomes]
rs2153567	0.88[EUR][1000 genomes]
rs2153568	0.91[EUR][1000 genomes]
rs2323482	0.88[EUR][1000 genomes]
rs2875069	0.82[EUR][1000 genomes]
rs34580180	0.86[ASN][1000 genomes]
rs4483753	0.83[EUR][1000 genomes]
rs4884396	0.87[EUR][1000 genomes]
rs4886366	0.83[EUR][1000 genomes]
rs4886367	0.87[EUR][1000 genomes]
rs4886371	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs4886372	0.86[EUR][1000 genomes]
rs4886373	0.89[EUR][1000 genomes]
rs4886374	0.91[EUR][1000 genomes]
rs7328627	0.83[EUR][1000 genomes]
rs7328967	0.83[EUR][1000 genomes]
rs7333956	0.81[EUR][1000 genomes]
rs7988690	0.92[EUR][1000 genomes]
rs7994543	0.91[EUR][1000 genomes]
rs7995118	0.91[EUR][1000 genomes]
rs7995227	0.91[EUR][1000 genomes]
rs7998919	0.86[EUR][1000 genomes]
rs9528394	0.91[EUR][1000 genomes]
rs9539271	0.88[EUR][1000 genomes]
rs9539275	0.88[EUR][1000 genomes]
rs9539298	0.91[EUR][1000 genomes]
rs9539299	0.91[EUR][1000 genomes]
rs9598348	0.87[EUR][1000 genomes]
rs9598356	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1038867	chr13:62302878-62594554	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832629	chr13:62320369-62497238	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62348400-62349200	Enhancers	Fetal Intestine Large	intestine
2	chr13:62348400-62349200	Enhancers	Fetal Intestine Small	intestine
3	chr13:62348600-62349400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr13:62348600-62351800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr13:62348800-62349600	Enhancers	Brain Hippocampus Middle	brain
6	chr13:62349000-62349400	Weak transcription	Brain Substantia Nigra	brain

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