Variant report

Variant	rs13408585
Chromosome Location	chr2:78238321-78238322
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10178092	1.00[EUR][1000 genomes]
rs10181240	1.00[EUR][1000 genomes]
rs10186219	1.00[ASN][1000 genomes]
rs10186421	1.00[AFR][1000 genomes]
rs10188929	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201290	1.00[AFR][1000 genomes]
rs13388014	1.00[EUR][1000 genomes]
rs13388217	1.00[EUR][1000 genomes]
rs13391371	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13395816	1.00[AFR][1000 genomes]
rs13403711	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13406837	1.00[ASN][1000 genomes]
rs13413424	1.00[EUR][1000 genomes]
rs13413439	1.00[EUR][1000 genomes]
rs13413512	1.00[EUR][1000 genomes]
rs13413777	1.00[EUR][1000 genomes]
rs13413832	1.00[EUR][1000 genomes]
rs13418894	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426866	1.00[EUR][1000 genomes]
rs13427757	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13429776	1.00[ASN][1000 genomes]
rs4143569	1.00[EUR][1000 genomes]
rs59141538	1.00[EUR][1000 genomes]
rs72921770	1.00[EUR][1000 genomes]
rs73943546	1.00[EUR][1000 genomes]
rs73943551	1.00[EUR][1000 genomes]
rs9973731	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917204	chr2:78047538-78602013	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3329151	chr2:78071300-78271485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1001461	chr2:78091352-78673948	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2757811	chr2:78126389-78711032	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759068	chr2:78126389-78711032	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1000527	chr2:78176225-78468796	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3447123	chr2:78186346-78239095	Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv2756933	chr2:78199735-78640246	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv524102	chr2:78221253-78562013	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2762686	chr2:78224683-78564328	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:78238000-78238400	Active TSS	Brain Substantia Nigra	brain
2	chr2:78238200-78238400	Enhancers	Brain Cingulate Gyrus	brain
3	chr2:78238200-78238600	Active TSS	Brain Angular Gyrus	brain
4	chr2:78238200-78240800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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