Variant report

Variant	rs13409160
Chromosome Location	chr2:76557198-76557199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13407527	0.83[AMR][1000 genomes]
rs13432989	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006097	chr2:76524248-76675427	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv519947	chr2:76537604-76588942	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874313	chr2:76540365-76591470	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2757809	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759064	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1008019	chr2:76542989-76586699	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2763343	chr2:76543001-76586711	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1007312	chr2:76544454-76582327	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1014043	chr2:76544454-76585748	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1008178	chr2:76544454-76586332	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1003728	chr2:76544454-76586699	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv582223	chr2:76545193-76588942	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1011137	chr2:76547751-76586699	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv874314	chr2:76548341-76598587	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv874315	chr2:76548341-76605834	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv874316	chr2:76548341-76613885	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv874317	chr2:76554077-76890567	Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	esv3439431	chr2:76556069-76558617	Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv3362975	chr2:76556344-76558292	Enhancers	n/a	n/a	inside rSNPs	diseases
20	esv3404313	chr2:76556844-76557792	Enhancers	n/a	n/a	inside rSNPs	diseases
21	esv3457929	chr2:76556922-76557387	Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv3487781	chr2:76556937-76557351	Enhancers	n/a	n/a	inside rSNPs	diseases
23	esv8258	chr2:76556941-76557395	Enhancers	n/a	n/a	inside rSNPs	diseases
24	esv3457931	chr2:76556944-76557370	Enhancers	n/a	n/a	inside rSNPs	diseases
25	esv3487785	chr2:76556964-76557322	Enhancers	n/a	n/a	inside rSNPs	diseases
26	esv3487783	chr2:76556964-76557370	Enhancers	n/a	n/a	inside rSNPs	diseases
27	esv3487782	chr2:76556969-76557332	Enhancers	n/a	n/a	inside rSNPs	diseases
28	esv3378	chr2:76556978-76557350	Enhancers	n/a	n/a	inside rSNPs	diseases
29	esv3457933	chr2:76556978-76557360	Enhancers	n/a	n/a	inside rSNPs	diseases
30	esv3457932	chr2:76556997-76557313	Enhancers	n/a	n/a	inside rSNPs	diseases
31	esv3487784	chr2:76556999-76557341	Enhancers	n/a	n/a	inside rSNPs	diseases
32	esv3374569	chr2:76557039-76557292	Enhancers	n/a	n/a	inside rSNPs	diseases
33	esv3457928	chr2:76557043-76557295	Enhancers	n/a	n/a	inside rSNPs	diseases
34	esv3487787	chr2:76557055-76557290	Enhancers	n/a	n/a	inside rSNPs	diseases
35	esv989387	chr2:76557057-76557290	Enhancers	n/a	n/a	inside rSNPs	diseases
36	esv1697288	chr2:76557057-76557291	Enhancers	n/a	n/a	inside rSNPs	diseases
37	esv3457934	chr2:76557057-76557292	Enhancers	n/a	n/a	inside rSNPs	diseases
38	esv3487788	chr2:76557057-76557292	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76557000-76557400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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