Variant report

Variant	rs13409603
Chromosome Location	chr2:40098634-40098635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7355579	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003593	chr2:40009597-40165666	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535651	chr2:40009597-40165666	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv873891	chr2:40046658-40173905	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916300	chr2:40079899-40339019	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv430947	chr2:40080723-40141649	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv581496	chr2:40082054-40123904	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1003896	chr2:40094081-40231585	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40097000-40098800	Enhancers	Fetal Stomach	stomach
2	chr2:40097200-40098800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:40097200-40098800	Enhancers	NHLF	lung
4	chr2:40097200-40099200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:40097200-40099200	Enhancers	HMEC	breast
6	chr2:40097200-40099200	Enhancers	NHEK	skin
7	chr2:40097400-40099200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:40097400-40099200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:40097400-40099200	Enhancers	NH-A	brain
10	chr2:40097400-40099200	Enhancers	NHDF-Ad	bronchial
11	chr2:40097400-40099200	Enhancers	Osteobl	bone
12	chr2:40097400-40099400	Enhancers	HSMM	muscle
13	chr2:40097600-40099000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr2:40097600-40099400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:40098000-40099200	Enhancers	Fetal Muscle Leg	muscle
16	chr2:40098200-40098800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:40098200-40098800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr2:40098200-40098800	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr2:40098200-40098800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr2:40098400-40098800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:40098400-40098800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:40098400-40098800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:40098400-40098800	Enhancers	Dnd41	blood
24	chr2:40098400-40099000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:40098400-40099000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:40098400-40099000	Enhancers	Colon Smooth Muscle	Colon
27	chr2:40098400-40102200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr2:40098600-40099000	Enhancers	Fetal Brain Female	brain
29	chr2:40098600-40099200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:40098600-40099200	Flanking Active TSS	HSMMtube	muscle
31	chr2:40098600-40102400	Weak transcription	Brain Anterior Caudate	brain
32	chr2:40098600-40102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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