Variant report

Variant	rs13411185
Chromosome Location	chr2:74065119-74065120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:74063951..74066600-chr2:74212134..74214083,2	MCF-7	breast:
2	chr2:74057033..74061162-chr2:74063972..74066162,5	K562	blood:
3	chr2:74064765..74066561-chr2:74208554..74211279,2	MCF-7	breast:
4	chr2:74064367..74067264-chr2:74069235..74073820,5	K562	blood:
5	chr2:74063298..74065774-chr2:74082057..74084341,2	K562	blood:
6	chr2:74054830..74059575-chr2:74061588..74066831,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255989	Chromatin interaction
ENSG00000235499	Chromatin interaction
ENSG00000237883	Chromatin interaction
ENSG00000124356	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1474335	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35283510	0.95[ASN][1000 genomes]
rs59631496	0.93[ASN][1000 genomes]
rs72814141	0.95[ASN][1000 genomes]
rs7588498	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757806	chr2:73717032-74078592	Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759060	chr2:73717032-74078592	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv834260	chr2:73906106-74076520	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74057000-74069400	Weak transcription	Colonic Mucosa	Colon
2	chr2:74057000-74076200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:74057000-74093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:74057600-74071400	Weak transcription	Fetal Kidney	kidney
5	chr2:74058000-74065400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:74058000-74069600	Strong transcription	Primary T cells from cord blood	blood
7	chr2:74058000-74070000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:74058000-74071200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:74058200-74067600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:74058400-74065200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:74058600-74071400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr2:74058800-74067400	Strong transcription	Liver	Liver
13	chr2:74059000-74065600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr2:74060000-74071400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:74060000-74072000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr2:74060200-74065600	Strong transcription	NHEK	skin
17	chr2:74060400-74065800	Weak transcription	NH-A	brain
18	chr2:74060400-74067600	Strong transcription	Fetal Thymus	thymus
19	chr2:74060400-74068200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr2:74060400-74068800	Weak transcription	Small Intestine	intestine
21	chr2:74060400-74071200	Weak transcription	Hela-S3	cervix
22	chr2:74060400-74071600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr2:74060400-74073000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr2:74060400-74074200	Weak transcription	Fetal Brain Male	brain
25	chr2:74060400-74076800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr2:74060600-74065200	Weak transcription	Brain Substantia Nigra	brain
27	chr2:74061000-74065200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:74061000-74065600	Weak transcription	K562	blood
29	chr2:74061000-74066400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:74061000-74068200	Weak transcription	Stomach Mucosa	stomach
31	chr2:74061000-74068600	Weak transcription	Brain Germinal Matrix	brain
32	chr2:74061000-74071400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:74061400-74065200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr2:74061800-74066600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr2:74062000-74065200	Weak transcription	HSMM	muscle
36	chr2:74062000-74065600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:74062000-74068800	Weak transcription	Adipose Nuclei	Adipose
38	chr2:74062000-74071600	Weak transcription	Fetal Lung	lung
39	chr2:74062200-74065200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr2:74062200-74065600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:74062200-74066200	Weak transcription	NHDF-Ad	bronchial
42	chr2:74062200-74066600	Weak transcription	GM12878-XiMat	blood
43	chr2:74062200-74068600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr2:74062200-74071400	Weak transcription	NHLF	lung
45	chr2:74062200-74071800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr2:74062400-74066600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr2:74062800-74065200	Weak transcription	Brain Anterior Caudate	brain
48	chr2:74062800-74065600	Weak transcription	Primary B cells from cord blood	blood
49	chr2:74062800-74065600	Weak transcription	Osteobl	bone
50	chr2:74062800-74067400	Enhancers	Rectal Smooth Muscle	rectum

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