Variant report

Variant	rs13412639
Chromosome Location	chr2:31352176-31352177
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1000916	1.00[JPT][hapmap]
rs17010725	1.00[JPT][hapmap]
rs4561706	1.00[JPT][hapmap]
rs7602985	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31347800-31358800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:31349400-31354400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:31349600-31355000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:31349600-31355600	Weak transcription	HMEC	breast
5	chr2:31349800-31354400	Weak transcription	NHEK	skin
6	chr2:31349800-31355400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:31349800-31357200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:31350000-31354000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:31350000-31355200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:31350000-31359600	Weak transcription	Pancreas	Pancrea
11	chr2:31350200-31355800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:31350800-31354000	Enhancers	Fetal Brain Male	brain
13	chr2:31351200-31352600	Enhancers	Brain Germinal Matrix	brain
14	chr2:31351600-31352400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr2:31351600-31352600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:31351600-31353000	Weak transcription	Left Ventricle	heart
17	chr2:31351600-31354000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:31351600-31358600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr2:31351600-31359600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr2:31351800-31353000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr2:31351800-31353400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr2:31351800-31355400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:31352000-31352200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr2:31352000-31353800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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