Variant report

Variant	rs13412776
Chromosome Location	chr2:33783393-33783394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33779415..33782050-chr2:33782764..33784303,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10182807	0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10193965	0.82[ASW][hapmap]
rs10198554	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13408511	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13408768	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13415637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13415828	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13426535	1.00[EUR][1000 genomes]
rs17012919	1.00[MEX][hapmap]
rs28565307	1.00[EUR][1000 genomes]
rs56765766	1.00[EUR][1000 genomes]
rs61361050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6709613	0.90[ASW][hapmap];0.86[LWK][hapmap]
rs6726524	1.00[CEU][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6729742	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7587952	1.00[EUR][1000 genomes]
rs7594196	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9679399	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33740800-33790000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr2:33748000-33790400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:33757200-33809800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:33760800-33783600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:33761000-33789000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:33761200-33783800	Weak transcription	Psoas Muscle	Psoas
7	chr2:33762200-33809800	Weak transcription	Aorta	Aorta
8	chr2:33765600-33784400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:33766800-33809800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr2:33772600-33791000	Strong transcription	GM12878-XiMat	blood
11	chr2:33772600-33793400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr2:33774000-33790200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr2:33775600-33783400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr2:33776000-33809800	Weak transcription	Pancreas	Pancrea
15	chr2:33776800-33790600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr2:33778000-33783600	Weak transcription	Fetal Intestine Small	intestine
17	chr2:33778000-33785200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:33778200-33784800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:33778400-33796800	Weak transcription	Liver	Liver
20	chr2:33778400-33806400	Weak transcription	Primary T cells from cord blood	blood
21	chr2:33778400-33807600	Weak transcription	NH-A	brain
22	chr2:33778400-33808600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr2:33779600-33783800	Weak transcription	Lung	lung
24	chr2:33779800-33783600	Enhancers	Fetal Heart	heart
25	chr2:33780000-33808600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr2:33780400-33783400	Weak transcription	Spleen	Spleen
27	chr2:33780400-33785800	Strong transcription	Primary B cells from cord blood	blood
28	chr2:33780400-33787600	Weak transcription	Placenta	Placenta
29	chr2:33780400-33808600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr2:33780400-33809200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr2:33780600-33783800	Weak transcription	NHDF-Ad	bronchial
32	chr2:33780600-33785800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr2:33780600-33787800	Weak transcription	Brain Anterior Caudate	brain
34	chr2:33780600-33789200	Weak transcription	Ovary	ovary
35	chr2:33780600-33790800	Strong transcription	Primary B cells from peripheral blood	blood
36	chr2:33780600-33791600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr2:33780800-33783800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr2:33780800-33784200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr2:33780800-33797400	Weak transcription	Brain Angular Gyrus	brain
40	chr2:33781000-33783400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr2:33781200-33792800	Weak transcription	HUVEC	blood vessel
42	chr2:33781200-33809800	Weak transcription	Gastric	stomach
43	chr2:33781600-33789200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr2:33781600-33790400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr2:33781800-33792600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr2:33782000-33784800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr2:33782000-33807000	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr2:33782200-33784400	Strong transcription	Brain Substantia Nigra	brain
49	chr2:33782200-33791800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr2:33782400-33785200	Weak transcription	HSMMtube	muscle

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