Variant report

Variant	rs13412801
Chromosome Location	chr2:168449057-168449058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10174687	1.00[AFR][1000 genomes]
rs10192028	1.00[AFR][1000 genomes]
rs10209128	1.00[AFR][1000 genomes]
rs13415003	1.00[AFR][1000 genomes]
rs13426791	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv834449	chr2:168340043-168511856	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv583592	chr2:168356232-168721539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1008206	chr2:168401249-168452887	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv583593	chr2:168402224-168452630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1004326	chr2:168403386-168452887	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168441600-168452600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:168448400-168449400	Enhancers	Brain Substantia Nigra	brain
3	chr2:168448400-168449600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:168448400-168449600	Enhancers	Brain Angular Gyrus	brain
5	chr2:168448600-168449400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:168448600-168449400	Enhancers	Brain Hippocampus Middle	brain
7	chr2:168448600-168449600	Enhancers	Brain Anterior Caudate	brain
8	chr2:168448600-168449600	Enhancers	Brain Cingulate Gyrus	brain
9	chr2:168448800-168449400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:168448800-168449400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr2:168448800-168449600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:168448800-168449600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:168449000-168449800	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links