Variant report

Variant	rs13413583
Chromosome Location	chr2:184384952-184384953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10931084	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12185705	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13413923	0.84[AFR][1000 genomes]
rs1919277	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2368444	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28617185	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4666919	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4666921	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62197639	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6720351	0.85[EUR][1000 genomes]
rs6731658	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9653301	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012672	chr2:184363204-184571778	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757843	chr2:184368473-184558908	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759105	chr2:184368473-184558908	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428729	chr2:184368473-184558908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13413583	FAM154B	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184378200-184385000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:184383400-184385200	Enhancers	Fetal Intestine Small	intestine
3	chr2:184383800-184385000	Weak transcription	Pancreas	Pancrea
4	chr2:184383800-184393800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:184384000-184385200	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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