Variant report

Variant	rs13413838
Chromosome Location	chr2:111694797-111694798
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10164695	0.84[AMR][1000 genomes]
rs10168046	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10169926	0.84[AMR][1000 genomes]
rs10171765	0.85[AMR][1000 genomes]
rs10177582	0.84[AMR][1000 genomes]
rs10185326	0.84[AMR][1000 genomes]
rs10188079	0.85[AMR][1000 genomes]
rs10202539	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10204997	0.84[AMR][1000 genomes]
rs10208020	0.84[AMR][1000 genomes]
rs11123211	0.83[AMR][1000 genomes]
rs11123227	0.85[AMR][1000 genomes]
rs1114413	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1114414	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11898005	0.84[AMR][1000 genomes]
rs12104528	0.84[AMR][1000 genomes]
rs12465068	0.84[AMR][1000 genomes]
rs12476335	0.84[AMR][1000 genomes]
rs13024140	0.91[ASN][1000 genomes]
rs13397744	0.83[AMR][1000 genomes]
rs1533296	0.85[AMR][1000 genomes]
rs17525147	0.83[AMR][1000 genomes]
rs17545048	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17545286	0.82[AMR][1000 genomes]
rs1810229	0.83[AMR][1000 genomes]
rs1872062	0.84[AMR][1000 genomes]
rs2128815	0.91[ASN][1000 genomes]
rs2341913	0.95[ASN][1000 genomes]
rs28769005	0.85[AMR][1000 genomes]
rs2880192	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3761710	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3789112	0.89[ASN][1000 genomes]
rs3789114	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3789116	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3789121	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3789127	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789130	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3789131	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3789134	0.86[AFR][1000 genomes]
rs3827548	0.93[ASN][1000 genomes]
rs4332932	0.81[AMR][1000 genomes]
rs4848344	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4849203	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4849298	0.93[ASN][1000 genomes]
rs62159472	0.84[AMR][1000 genomes]
rs62159474	0.84[AMR][1000 genomes]
rs62159553	0.81[AMR][1000 genomes]
rs62159556	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62159558	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6542189	0.84[AMR][1000 genomes]
rs6542190	0.84[AMR][1000 genomes]
rs6714299	0.81[AMR][1000 genomes]
rs6720503	0.81[AMR][1000 genomes]
rs7355443	0.84[AMR][1000 genomes]
rs750225	0.84[AMR][1000 genomes]
rs7563488	0.85[AMR][1000 genomes]
rs880506	0.85[AMR][1000 genomes]
rs880507	0.84[AMR][1000 genomes]
rs900556	0.81[AMR][1000 genomes]
rs900557	0.81[AMR][1000 genomes]
rs9308691	0.85[AMR][1000 genomes]
rs932077	0.83[AMR][1000 genomes]
rs932078	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874838	chr2:111376870-112046226	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv874839	chr2:111400934-111868010	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997829	chr2:111486961-111780537	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv834330	chr2:111593290-111789447	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv874840	chr2:111605245-111695479	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1004949	chr2:111607532-111780719	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1002568	chr2:111607532-111781442	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1005665	chr2:111610107-111762039	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv535892	chr2:111610107-111762039	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:111691000-111700000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:111693000-111706400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:111693200-111695800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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